Joseph M. Ziegelbauer, Ph.D.

Joseph M. Ziegelbauer, Ph.D.
Head, Viral MicroRNA Section

Dr. Ziegelbauer was the first to report using pulse labeling of proteins coupled with tandem mass spectrometry to discover human targets of herpesvirus microRNAs. His recent research has discovered functions of viral microRNAs related to inhibiting apoptosis, evading immune responses, and promoting angiogenesis. Ongoing research focuses on networks and pathways redundantly targeted by multiple viral microRNAs. Using a variety of techniques, these methods will lead to the discovery of new therapeutic targets for inhibiting viral oncogenesis.
*** Please note that our laboratory does not have any available positions for the 2018 Summer Internship Program. ***

Areas of Expertise
1) Kaposi's sarcoma-associated herpesvirus (KSHV), 2) microRNAs, 3) microRNA target prediction, 4) expression profiling, 5) network analysis, 6) proteomics

Contact Info

Joseph M. Ziegelbauer, Ph.D.
Center for Cancer Research
National Cancer Institute
Building 10, Room 6N110
Bethesda, MD 20892
Ph: 301-594-6634

Multiple groups recently discovered that Kaposi's sarcoma-associated Herpesvirus (KSHV or human herpesvirus 8), which is associated with Kaposi's sarcoma, multicentric Castleman's disease and primary effusion lymphoma, expresses multiple microRNAs. Small non-coding RNAs called microRNAs have become newly appreciated molecules for gene regulation with each microRNA potentially targeting hundreds of target genes for repression. KSHV microRNAs are expressed during latency and represent an alternative method to alter host gene expression without generating viral proteins that could be detected by the host immune system. However, a current challenge is identifying the targets of microRNAs in order to determine the functions of microRNAs.

To address this challenge, we developed a novel system to identify host targets of virally encoded microRNAs using a combination of gain and loss of microRNA function experiments, followed by expression profiling and sequence analysis. This dataset represents one of the largest microRNA target databases known since we have individually inhibited and expressed all seventeen viral microRNAs in multiple cell types. The first validated microRNA target from this approach was the human gene BCL2-Associated Transcription Factor 1 (BCLAF1). Note this target may have been missed using other common microRNA target prediction methods. Further studies revealed BCLAF1 may inhibit viral replication. Using a variety of expression profiling data (including SILAC), we constructed a dataset to integrate the expression data from multiple gain and loss of microRNA function experiments. We have tested over fifty predicted target genes and over thirty microRNA target genes were significantly inhibited by viral microRNAs using a variety of validation methods. In addition, we identified multiple examples of individual target genes being inhibited by multiple KSHV microRNAs. It is noteworthy to state approximately half of these microRNA:target interactions are not detected using common bioinformatic methods.

A subset of these target genes has been further validated by looking at protein expression of endogenous target genes in response to viral microRNA expression, microRNA inhibition in infected cells and KSHV infection. To assess changes in protein expression, we utilize a near-infrared scanner to perform simultaneous two-color quantitative western blotting assays. In addition, we have mapped functional microRNA target sites in multiple human genes using site directed mutagenesis. Furthermore, using KS biopsies we have determined multiple microRNA target genes that are inhibited in our cell culture systems are also inhibited at sites of KSHV infection in patients. We have used multiple methods to analyze the functional significance of the validated target genes. Many targets are involved with regulation of the cell cycle, apoptosis and other cancer-related functions. Our progress studying the functional significance of KSHV microRNAs has revealed a cytokine receptor (tumor necrosis factor receptor superfamily, member 12A) is targeted by a KSHV microRNA. We demonstrated KSHV microRNA-10A can inhibit TWEAK-induced apoptosis using multiple assays. Also KSHV microRNA-10A can suppress induction of pro-inflammatory cytokine IL-6 and IL-8 in response to the TWEAK cytokine. This represents a mechanism for KSHV to avoid death of an infected cell during latency and to inhibit immune responses by the host. We are actively studying the functional consequences of at least five other human genes that are targeted by KSHV microRNAs.

Finally, we are using network analysis to understand how newly identified microRNA target genes could be interacting with each other. This analysis has revealed multiple examples of how microRNA target genes are in the same signaling pathway. These examples highlight significant pathways targeted by KSHV microRNAs and help us understand why the virus has selected specific human target genes for inhibition. We hope to discover new functions of human genes as they relate to viral infection and cancer.

Scientific Focus Areas:
Cancer Biology, Cell Biology, Microbiology and Infectious Diseases, Systems Biology, Virology
View Dr. Ziegelbauer's PubMed Summary.

Selected Recent Publications

  1. Ramalingam D, Happel C, Ziegelbauer JM.
    PLoS Biol. 14(11): 4249-61, 2016. [ Journal Article ]
  2. Liu X, Happel C, Ziegelbauer JM.
    J Virol. [Epub ahead of print], 2016. [ Journal Article ]
  3. Ramalingam D, Happel C, Ziegelbauer JM
    J. Virol. 89: 4249-61, 2015. [ Journal Article ]
  4. Gallaher AM, Das S, Xiao Z, Andresson T, Kieffer-Kwon P, Happel C, Ziegelbauer J.
    PLoS Pathog. 9: e1003584, 2013. [ Journal Article ]
  5. Ziegelbauer JM, Sullivan CS, Ganem D.
    Nat. Genet. 41: 130-134, 2009. [ Journal Article ]

Dr. Joseph Ziegelbauer received a B.S. from Cornell University with a major in biology and focus on biochemistry while working in the laboratory of Dr. John Lis. He then joined the laboratory of Dr. Robert Tjian for his graduate research where he received his Ph.D. from the University of California - Berkeley. Later, he began studying viral microRNAs in the laboratory of Dr. Don Ganem at the University of California - San Francisco. Dr. Ziegelbauer joined NCI in November 2008. His primary focus is elucidating the functions of microRNAs expressed by Kaposi's sarcoma-associated herpesvirus (KSHV or HHV-8).

Name Position
Insun Kook Ph.D. Postdoctoral Fellow (Visiting)
Anna Serquina Ph.D. Postdoctoral Fellow (CRTA)
Tagawa Takanobu Ph.D. Postdoctoral Fellow (Visiting)