Di  Xia, Ph.D.
Di Xia, Ph.D.
Senior Investigator
Head, Crystallography Section

Center for Cancer Research
National Cancer Institute

Building 37, Room 2122C
Bethesda, MD 20892-4256
301-435-6315

Dr. Xia devotes his research to the structure and function relationship of membrane proteins at atomic resolution. He determined the crystal structures of Complex III or cytochrome bc1 complex of respiratory and photosynthetic apparatus and elucidated mechanisms of its function and antibiotic resistance. These works form the foundation that guides rational drug design against Complex III of pathogenic organisms.
Recently, Dr. Xia has focused his attention to the structural mechanism of multidrug resistance mediated by membrane transporters. Structural revelation of these transporters promise a detailed understanding of how diverse drugs are pumped and how resistance might be reversed.

Areas of Expertise
1) membrane protein 2) drug resistance 3) electron transport 4) crystallography 3) AAA protein 6) bacterial fimbriae

Structural Study of Biological Membrane Proteins

Recent advances in genome research revealed that over one-third of open reading frames in yeast (S. cerevisiae) are predicted to be integral membrane proteins with 1 to 14 transmembrane segments, reflecting the importance of membrane proteins in the life cycle of this unicellular eukaryotic organism. In multicellular organisms, cellular communication and interaction require increased biological complexity and likely an increased fraction of membrane proteins.

Membrane proteins provide vital cellular functions involved in cell-cell communication, recognition, adhesion, and membrane fusion; in material exchange, transportation and detoxication; and in processes of cellular energy conservation. Structural studies, especially those done by X-ray crystallography, on a limited number of membrane proteins have contributed significantly to our understanding of the function of these biological macromolecules.In the light of the increased number of membrane proteins being studied, the paucity of structural data of membrane proteins at atomic resolution creates a vacuum in our knowledge which is only being filled rather slowly. To date, only a limited number of families of membrane protein structures have been determined; most of them are of bacterial origin. The situation arises mainly due to tremendous difficulty in purifying sufficient quantity of most membrane proteins, especially those of eukaryotic origin, needed for structural analysis and in producing diffraction quality crystals; and failure in overexpressing membrane proteins only makes the situation worse.

My lab tries to use crystallographic methodology coupled various biochemical and biophysical techniques to explore the structure and function relations of polytopic membrane proteins by examining a few carefully selected membrane protein transporters such as those involved in cellular multidrug resistance (P-glycoprotein) and respiration (cytochrome bc1 complex of both mitochondria and bacteria). My lab have made great progresses in determining crystal structures of these large integral membrane protein complexes and structures defining reaction intermediates by trapping proteins in different conformations using specific inhibitors and substrates.

We also explore the possibility of using our atomic resolution knowledge to design and test novel chemical agents that specifically target these membrane proteins. We hope that these studies will result in our deep understanding of membrane protein architecture in general, and specifically the mechanisms of functions of these important biological membrane transporters, and in potential development of therapeutics for the benefit of mankind.

Scientific Focus Areas:
Biomedical Engineering and Biophysics, Computational Biology, Microbiology and Infectious Diseases, Molecular Biology and Biochemistry, Structural Biology
Selected Recent Publications
  1. Bao R, Esser L, Poole S, McVeigh A, Chen YX, Savarino SJ, Xia D.
    Acta Crystallogr F Struct Biol Commun. 70: 196-9, 2014. [ Journal Article ]
  2. Esser L, Yu C, Xia D.
    Curr Pharm Des. 20: 704-24, 2014. [ Journal Article ]
  3. Xiao YM, Esser L, Zhou F, Li C, Zhou YH, Yu CA, Qin ZH, Xia D.
    PLoS ONE. 9: e93765, 2014. [ Journal Article ]
  4. Tang WK, Xia D.
    J. Biol. Chem. 288: 36624-35, 2013. [ Journal Article ]
  5. Xia D, Esser L, Tang W, Zhou F, Zhou Y, Yu L, Yu C.
    Biochim. Biophys. Acta. 1827: 11-12, 2013. [ Journal Article ]

Dr. Xia obtained his Ph.D. in the field of structural virology from the Department of Biological Sciences, Purdue University, Indiana, and received his postdoctoral training in membrane protein structural biology with Dr. Deisenhofer at the University of Texas, Southwestern Medical Center at Dallas, Texas. He joined the Laboratory of Cell Biology at the NCI as a senior investigator in 1998.

Name Position
Rui Bao Ph.D. Postdoctoral Fellow (Visiting)
Elizabeth Bou Summer Student
Lothar Esser Ph.D. Staff Scientist
Wenting Ma Summer Student
Ajeet Mandal Postdoctoral Fellow (CRTA)
Taivan Odzorig Summer Student
Wai-Kwan Tang Ph.D. Research Fellow
Tao Wan Postdoctoral Fellow (Visiting)
Yumei Xiao Special Volunteer
Jianxiong Xu Special Volunteer
Alex Zhang Summer Student
Fei Zhou Postdoctoral Fellow (Visiting)
Yihui Zhou Special Volunteer

Summary

Dr. Xia devotes his research to the structure and function relationship of membrane proteins at atomic resolution. He determined the crystal structures of Complex III or cytochrome bc1 complex of respiratory and photosynthetic apparatus and elucidated mechanisms of its function and antibiotic resistance. These works form the foundation that guides rational drug design against Complex III of pathogenic organisms.
Recently, Dr. Xia has focused his attention to the structural mechanism of multidrug resistance mediated by membrane transporters. Structural revelation of these transporters promise a detailed understanding of how diverse drugs are pumped and how resistance might be reversed.

Areas of Expertise
1) membrane protein 2) drug resistance 3) electron transport 4) crystallography 3) AAA protein 6) bacterial fimbriae

Research

Structural Study of Biological Membrane Proteins

Recent advances in genome research revealed that over one-third of open reading frames in yeast (S. cerevisiae) are predicted to be integral membrane proteins with 1 to 14 transmembrane segments, reflecting the importance of membrane proteins in the life cycle of this unicellular eukaryotic organism. In multicellular organisms, cellular communication and interaction require increased biological complexity and likely an increased fraction of membrane proteins.

Membrane proteins provide vital cellular functions involved in cell-cell communication, recognition, adhesion, and membrane fusion; in material exchange, transportation and detoxication; and in processes of cellular energy conservation. Structural studies, especially those done by X-ray crystallography, on a limited number of membrane proteins have contributed significantly to our understanding of the function of these biological macromolecules.In the light of the increased number of membrane proteins being studied, the paucity of structural data of membrane proteins at atomic resolution creates a vacuum in our knowledge which is only being filled rather slowly. To date, only a limited number of families of membrane protein structures have been determined; most of them are of bacterial origin. The situation arises mainly due to tremendous difficulty in purifying sufficient quantity of most membrane proteins, especially those of eukaryotic origin, needed for structural analysis and in producing diffraction quality crystals; and failure in overexpressing membrane proteins only makes the situation worse.

My lab tries to use crystallographic methodology coupled various biochemical and biophysical techniques to explore the structure and function relations of polytopic membrane proteins by examining a few carefully selected membrane protein transporters such as those involved in cellular multidrug resistance (P-glycoprotein) and respiration (cytochrome bc1 complex of both mitochondria and bacteria). My lab have made great progresses in determining crystal structures of these large integral membrane protein complexes and structures defining reaction intermediates by trapping proteins in different conformations using specific inhibitors and substrates.

We also explore the possibility of using our atomic resolution knowledge to design and test novel chemical agents that specifically target these membrane proteins. We hope that these studies will result in our deep understanding of membrane protein architecture in general, and specifically the mechanisms of functions of these important biological membrane transporters, and in potential development of therapeutics for the benefit of mankind.

Scientific Focus Areas:
Biomedical Engineering and Biophysics, Computational Biology, Microbiology and Infectious Diseases, Molecular Biology and Biochemistry, Structural Biology

Publications

Selected Recent Publications
  1. Bao R, Esser L, Poole S, McVeigh A, Chen YX, Savarino SJ, Xia D.
    Acta Crystallogr F Struct Biol Commun. 70: 196-9, 2014. [ Journal Article ]
  2. Esser L, Yu C, Xia D.
    Curr Pharm Des. 20: 704-24, 2014. [ Journal Article ]
  3. Xiao YM, Esser L, Zhou F, Li C, Zhou YH, Yu CA, Qin ZH, Xia D.
    PLoS ONE. 9: e93765, 2014. [ Journal Article ]
  4. Tang WK, Xia D.
    J. Biol. Chem. 288: 36624-35, 2013. [ Journal Article ]
  5. Xia D, Esser L, Tang W, Zhou F, Zhou Y, Yu L, Yu C.
    Biochim. Biophys. Acta. 1827: 11-12, 2013. [ Journal Article ]

Biography

Dr. Xia obtained his Ph.D. in the field of structural virology from the Department of Biological Sciences, Purdue University, Indiana, and received his postdoctoral training in membrane protein structural biology with Dr. Deisenhofer at the University of Texas, Southwestern Medical Center at Dallas, Texas. He joined the Laboratory of Cell Biology at the NCI as a senior investigator in 1998.

Team

Name Position
Rui Bao Ph.D. Postdoctoral Fellow (Visiting)
Elizabeth Bou Summer Student
Lothar Esser Ph.D. Staff Scientist
Wenting Ma Summer Student
Ajeet Mandal Postdoctoral Fellow (CRTA)
Taivan Odzorig Summer Student
Wai-Kwan Tang Ph.D. Research Fellow
Tao Wan Postdoctoral Fellow (Visiting)
Yumei Xiao Special Volunteer
Jianxiong Xu Special Volunteer
Alex Zhang Summer Student
Fei Zhou Postdoctoral Fellow (Visiting)
Yihui Zhou Special Volunteer