Hamid Beiki, Ph.D.

Hamid Beiki, Ph.D.

  • Center for Cancer Research
  • National Cancer Institute


Dr. Beiki is a computational biologist with a primary interest in integrating DNA and RNA information to discover functional elements of genome and gene regulation. Through integrative analysis of high-throughput datasets, and applying novel statistical strategies, Dr. Beiki has made important contributions to the fields of transcriptomics and genomics.

Areas of Expertise

Alternative Splicing
Computational Biology


Selected Publications

Quantitative analysis of the blood transcriptome of young healthy pigs and its relationship with subsequent disease resilience

Kyu-Sang Lim, Jian Cheng, Austin Putz, Qian Dong, Xuechun Bai, Hamid Beiki, Christopher K Tuggle, Michael K Dyck, Pig Gen Canada, Frederic Fortin, John C S Harding, Graham S Plastow , Jack C M Dekkers
BMC Genomics . 22(1): 1-18, 2021.
Full-Text Article
[ Journal Article ]

An improved pig reference genome sequence to enable pig genetics and genomics research

Amanda Warr, Nabeel Affara, Bronwen Aken, Hamid Beiki, Derek M Bickhart, Konstantinos Billis, William Chow Lel Eory, Heather A Finlayson, Paul Flicek, Carlos G Girón, Darren K Griffin, Richard Hall, Greg Hannum, Thibaut Hourlier, Kerstin Howe, David A Hume, Osagie Izuogu, Kristi Kim, Sergey Koren, Haibou Liu, Nancy Manchanda, Fergal J Martin, Dan J Nonneman, Rebecca E O'Connor, Adam M Phillippy, Gary A Rohrer, Benjamin D Rosen, Laurie A Rund, Carole A Sargent, Lawrence B Schook, Steven G Schroeder, Ariel S Schwartz, Ben M Skinner, Richard Talbot, Elizabeth Tseng, Christopher K Tuggle, Mick Watson, Timothy P L Smith, Alan L Archibald
Gigascience. 9(6): 2020.
Full-Text Article
[ Journal Article ]

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data

H Beiki, H Lio, J Huang, N Manchanda, D Nonneman, T Smith, J Reecy, C Tuggle
BMC Genomics. 20(1): 1-19, 2019.
Full-Text Article
[ Journal Article ]

Recent advances in plant and animal genomics are taking agriculture to new heights

H Beiki, A Eveland, C Tuggle
Genome Biology. 19(1): 1-4, 2018.
Full-Text Article
[ Journal Article ]

Large-scale gene co-expression network as a source of functional annotation for cattle genes

Hamid Beiki, Ardeshir Nejati-Javaremi, Abbas Pakdel, Ali Masoudi-Nejad, Zhi-Liang Hu, James M Reecy
BMC Genomics. 17(1): 1-13, 2016.
Full-Text Article
[ Journal Article ]