Breadcrumb

Headshot of Dr. Fathi Elloumi

Fathi Elloumi, Ph.D.

  • Center for Cancer Research
  • National Cancer Institute

RESEARCH SUMMARY

Dr. Elloumi’s research focuses on applying data-mining techniques and establishing new approaches or algorithms for understanding complex biological data and predicting the causes and mechanisms of diseases, with the aim of improving diagnosis and treatment. Currently he is working on developing tools that support cancer research and advance personalized medicine.

Areas of Expertise

Bioinformatics
Data Mining
Data Modeling
Software and Web Development
Machine Learning
Cancer Genomics

Publications

Selected Recent Publications

A Database Tool Integrating Genomic and Pharmacologic Data from Adrenocortical Carcinoma Cell Lines, PDX, and Patient Samples

Arakawa Y, Elloumi F, Varma S, Khandagale P, Jo U, Kumar S, Roper N, Reinhold WC, Robey RW, Takebe N, Gottesman MM, Thomas CJ, Boeva V, Berruti A, Abate A, Tamburello M, Sigala S, Hantel C, Weigand I, Wierman ME, Kiseljak-Vassiliades K, Del Rivero J, Pommier Y.
Cancer Res Commun. Sep 1; 4(9): 2384-2398, 2024. [ Journal Article ]

Sarcoma_CellminerCDB: A tool to interrogate the genomic and functional characteristics of a comprehensive collection of sarcoma cell lines

Tlemsani C, Heske CM, Elloumi F, Pongor L, Khandagale P, Varma S, Luna A, Meltzer PS, Khan J, Reinhold WC, Pommier Y.
iScience. Apr 18;27(6):109781: 2024. [ Journal Article ]

CellMinerCDB: NCATS Is a Web-Based Portal Integrating Public Cancer Cell Line Databases for Pharmacogenomic Explorations.

Reinhold WC, Wilson K, Elloumi F, Bradwell KR, Ceribelli M, Varma S, Wang Y, Duveau D, Menon N, Trepel J, Zhang X, Klumpp-Thomas C, Micheal S, Shinn P, Luna A, Thomas C, Pommier Y.
Cancer Res. . Jun 15;83(12): 1941-1952, 2023. [ Journal Article ]

CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics

Luna A, Elloumi F, Varma S, Wang Y, Rajapakse VN, Aladjem MI, Robert J, Sander C, Pommier Y, Reinhold WC.
Nucleic Acids Res.. Jan 8;49(D1): D1083-D1093, 2021.

Candidate biomarker assessment for pharmacological response

Reinhold WC, Elloumi F, Varma S, Robert J, Mills GB, Pommier Y.
Transl Oncol. Oct;13(10):100830: 2020.