David M. Sturgill, Ph.D.
David M. Sturgill, Ph.D.
Staff Scientist

Center for Cancer Research
National Cancer Institute

Building 41, Room B622
Bethesda, MD 20892
301-827-4040

Comparative genomics, transcriptomics, and epigenomics. Applications of high-throughput sequencing. Tool development for RNA-SEQ. Software Analysis of splicing from RNA-Seq data:

Areas of Expertise
Splicing Analysis Kit (Spanki)

Comparative genomics, transcriptomics, and epigenomics. Applications of high-throughput sequencing. Tool development for RNA-SEQ.

Software

Analysis of splicing from RNA-Seq data:

Selected Publications
  1. Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM.
    Nat. Genet.. 43: 1179-85, 2011. [ Journal Article ]
  2. Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.
    Nature. 471: 473-9, 2011. [ Journal Article ]
  3. Parisi MJ, Gupta V, Sturgill D, Warren JT, Jallon JM, Malone JH, Zhang Y, Gilbert LI, Oliver B.
    BMC Genomics. 11: 346, 2010. [ Journal Article ]
  4. Zhang SL, Wang X, Manna S, Zlotoff DA, Bryson JL, Blazar BR, Bhandoola A.
    Blood. 124: 296-304, 2014. [ Journal Article ]
  5. De Obaldia ME, Bell JJ, Wang X, Harly C, Yashiro-Ohtani Y, DeLong JH, Zlotoff DA, Sultana DA, Pear WS, Bhandoola A.
    Nat. Immunol.. 14: 1277-84, 2013. [ Journal Article ]

Summary

Comparative genomics, transcriptomics, and epigenomics. Applications of high-throughput sequencing. Tool development for RNA-SEQ. Software Analysis of splicing from RNA-Seq data:

Areas of Expertise
Splicing Analysis Kit (Spanki)

Research

Comparative genomics, transcriptomics, and epigenomics. Applications of high-throughput sequencing. Tool development for RNA-SEQ.

Software

Analysis of splicing from RNA-Seq data:

Publications

Selected Publications
  1. Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM.
    Nat. Genet.. 43: 1179-85, 2011. [ Journal Article ]
  2. Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.
    Nature. 471: 473-9, 2011. [ Journal Article ]
  3. Parisi MJ, Gupta V, Sturgill D, Warren JT, Jallon JM, Malone JH, Zhang Y, Gilbert LI, Oliver B.
    BMC Genomics. 11: 346, 2010. [ Journal Article ]
  4. Zhang SL, Wang X, Manna S, Zlotoff DA, Bryson JL, Blazar BR, Bhandoola A.
    Blood. 124: 296-304, 2014. [ Journal Article ]
  5. De Obaldia ME, Bell JJ, Wang X, Harly C, Yashiro-Ohtani Y, DeLong JH, Zlotoff DA, Sultana DA, Pear WS, Bhandoola A.
    Nat. Immunol.. 14: 1277-84, 2013. [ Journal Article ]